EGAF00005316392 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005316392
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	54010
Sequences flagged as poor quality	0
Sequence length	35-251
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	173	0.3203110535086095	No Hit
GTACAAGGAAGGGGTAGGCTATGTGTTTTGTCAGGGGGTTGAGAATGAGT	70	0.12960562858729863	No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG	65	0.12034808368820589	No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA	63	0.11664506572856878	No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG	61	0.11294204776893169	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAAGG	20	9.820232E-4	279.95212	245
ACTGGAT	30	0.0033055397	186.63474	245
CTTGTAC	45	0.0036794594	61.57559	3
GTACAAG	45	0.0036794594	61.57559	1
TTGTACT	45	0.0036794594	61.57559	4
TCTAGTA	45	0.0036794594	61.57559	3
CAAGGAA	45	0.0036794594	61.57559	4
AGGCTGT	45	0.0036794594	61.57559	6
GTTGTAT	70	3.1762206E-4	52.779076	1
ACAAGGA	55	0.008140364	50.380024	3
TTGTATA	80	6.137303E-4	46.181694	2
CCCAACA	170	0.0014280945	38.844246	200-204
TGGGCAG	100	0.0018396915	36.945354	5
CCTATGT	115	0.003650898	32.126392	8
CTAACTA	135	0.007994726	27.366926	9
CCATACT	185	0.0012219027	24.963078	4
ATACTAA	320	6.0570273E-5	20.20449	6
CTAATAC	240	0.005537558	19.242373	3
TAAGGGG	245	0.006238102	18.849672	5
ATTTACG	105	0.009021481	17.704914	225-229