EGAF00005316393 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005316393
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	54010
Sequences flagged as poor quality	0
Sequence length	35-251
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	175	0.3240140714682466	No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG	71	0.1314571375671172	No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG	64	0.11849657470838733	No Hit
GTTGTATATAGCCTAGAATTTTTCGTTCGGTAAGCATTAGGAATGCCATT	58	0.10738752082947603	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGCCG	20	1.4711803E-4	138.44472	9
TCTAGCC	30	7.3838676E-4	92.29647	3
CCTAAAT	40	0.0023136258	69.22236	3
CTAGCCT	55	9.6746066E-5	67.1247	4
AGATTGG	45	0.0036900383	61.53098	6
GATAGAT	45	0.0036900383	61.53098	3
ATAGATT	50	0.0056000105	55.37788	4
GCCCCCT	55	0.008163717	50.343525	6
TAGATTG	55	0.008163717	50.343525	5
GAGCATC	55	0.008163717	50.343525	5
AGGGGAT	165	0.008286164	50.018135	245
CTTAGAA	15	0.009914576	47.97633	115-119
GCCACCC	35	0.007358319	39.796036	155-159
ATTGGTC	95	0.0014350108	38.86167	8
AGGGCTG	95	0.0014350108	38.86167	5
CCGTTTA	25	0.0055483715	29.53487	10-14
TGATGCG	45	0.0062355087	28.829668	195-199
CGCCACC	35	0.007358319	27.872862	120-124
TGTATTC	35	0.007978012	27.415045	115-119
GCGGCGT	40	0.008002328	27.39614	150-154