FastQCFastQC Report
Wed 8 May 2024
EGAF00005316399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005316399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71032
Total Bases12.2 Mbp
Sequences flagged as poor quality0
Sequence length35-251
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3400.4786575064759545No Hit
GGTTTATAGATAGTTGGGTGGTTGGTGTAAATGAGTGAGGCAGGAGTCCG800.11262529564140106No Hit
CTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTC740.10417839846829599No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)