EGAF00005316403 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005316403
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	62020
Sequences flagged as poor quality	0
Sequence length	35-251
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	188	0.30312802321831667	No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA	93	0.14995162850693325	No Hit
GTATAGGGCTGTGACTAGTATGTTGAGTCCTGTAAGTAGGAGAGTGATAT	73	0.11770396646243148	No Hit
CTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCACGTTCTCCTGA	72	0.11609158336020639	No Hit
ACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTACCAC	72	0.11609158336020639	No Hit
GTATTATACCATAGCCGCCTAGTTTTAAGAGTACTGCGGCAAGTACTATT	70	0.1128668171557562	No Hit
CTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTC	67	0.10802966784908094	No Hit
GGTTAATAGTGGGGGGTAAGGCGAGGTTAGCGAGGCTTGCTAGAAGTCAT	67	0.10802966784908094	No Hit
GTACAAGGAAGGGGTAGGCTATGTGTTTTGTCAGGGGGTTGAGAATGAGT	64	0.10319251854240567	No Hit
CTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTACC	64	0.10319251854240567	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTACC	45	4.8296657E-5	77.248405	9
GCATGGC	35	0.0017308628	74.489525	3
TTAGAGT	45	0.004686639	57.936306	4
AGTTTAC	60	2.0063098E-4	57.936302	8
CTTCACA	95	5.421098E-7	54.88702	9
TATATCG	50	0.0071105403	52.142673	5
ACTAACT	50	0.0071105403	52.142673	8
CTCTATA	100	7.7241566E-7	52.142673	2
TCTATAC	120	4.647518E-8	50.694263	3
TAAACAT	125	0.00801155	50.50682	235-239
TATACTT	75	6.0358417E-4	46.34904	5
TTAAAGT	80	8.2949176E-4	43.452225	4
ACTTCAC	105	6.309237E-5	41.383076	8
ACTATCG	85	0.0011178601	40.896214	8
ACTATAC	85	0.0011178601	40.896214	3
CAAGGAA	85	0.0011178601	40.896214	4
GTGTTAG	110	8.2998544E-5	39.50202	1
GTACAAG	90	0.0014805952	38.624203	1
AGGAAGG	90	0.0014805952	38.624203	6
TCTCTAT	140	7.823255E-6	37.244762	1