FastQCFastQC Report
Thu 2 May 2024
EGAF00005317610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005317610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26039407
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTAAGGTCATCTCGTAT6377452.449153315972211TruSeq Adapter, Index 2 (97% over 36bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)