EGAF00005317870 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005317870
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3260202
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	18972	0.5819271321224881	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	10035	0.30780301343291	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6820	0.20918949193945652	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5273	0.16173844442767657	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5105	0.1565853894942706	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4697	0.14407082751314182	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4001	0.12272245707474567	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3973	0.12186361458584467	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5695	36.278847	32
GCGGCAC	5865	35.183018	33
CGGCACC	6045	34.21177	34
TATCGGA	165	33.28027	8
TCGCCGG	5830	33.00299	48
CCGTCGC	5950	32.440533	45
CCCGTCG	5995	32.22702	44
AGGACCG	735	32.102512	70
TTATCGG	195	31.680256	7
GCACCCC	6600	31.422964	36
AGTCCGC	6760	30.867943	7
CACCCCC	6790	30.511095	37
CCCCCGA	6705	30.494188	19
CAGTCCG	6580	30.408392	6
GTCCGCC	7010	29.913967	8
CGTACGT	230	29.881407	19
ACCCGCG	6940	29.533009	25
CGATCTA	250	29.365145	47
TCCGCCC	7210	29.320826	9
CCCCCGT	6585	29.297432	42