EGAF00005317872 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005317872
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3258877
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	20100	0.6167768835706288	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	10202	0.31305262518346044	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7236	0.22203967808542635	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5508	0.16901527734860813	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5443	0.16702072523755881	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4543	0.13940384985379933	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4204	0.1290014934592499	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	3891	0.11939695790912024	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3274	0.10046405556269843	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5730	36.482708	32
GCGGCAC	5940	35.21094	33
CGGCACC	5995	34.792904	34
TCGCCGG	5860	34.205376	48
CCGTCGC	5955	33.747566	45
CCCGTCG	6075	33.17558	44
CGATCTA	250	32.15366	47
GCACCCC	6615	31.828875	36
ACCCGCG	6810	31.085548	25
CCCCCGA	6825	30.97775	19
AGTCCGC	6850	30.972778	7
GTTATCG	225	30.51615	6
CCCCGAC	6925	30.49393	20
CACCCCC	6940	30.458178	37
CAGTCCG	6590	30.371443	6
CCCCCGT	6625	30.321835	42
GGCACCC	6965	30.261358	35
CGTACGT	265	29.83729	19
TCCGCCC	7275	29.39932	9
GTCCGCC	7230	29.39237	8