EGAF00005317876 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005317876
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3326617
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	20040	0.6024138035728188	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	10178	0.30595647169481793	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7143	0.2147226446567188	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5635	0.1693913065435546	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5390	0.16202646712861746	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4529	0.13614431718469544	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4131	0.12418021070655264	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	3845	0.11558288796095252	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5835	38.066933	32
GCGGCAC	6040	36.910805	33
CGGCACC	6220	35.807674	34
TCGCCGG	6075	34.67108	48
CCGTCGC	6175	34.085625	45
CCCGTCG	6210	33.984055	44
GCACCCC	6920	32.42469	36
AGTCCGC	6900	32.29607	7
CCCCCGA	6920	32.08968	19
GTGCCGT	555	31.606169	1
CCCCCGT	6680	31.436516	42
GGCACCC	7200	31.193369	35
CAGTCCG	6750	31.080753	6
CCCCGAC	7225	30.79655	20
CACCCCC	7315	30.78878	37
ACCCGCG	7180	30.770954	25
GTCCGCC	7320	30.63065	8
TCCGCCC	7510	30.084312	9
CCGCGCG	7435	29.882711	27
CCCGACC	7915	28.167608	21