FastQCFastQC Report
Wed 8 May 2024
EGAF00005317877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005317877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3326617
Total Bases248 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT149340.4489245380517204No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN100470.30201853715050453No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG89640.2694629408795782No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA35560.10689538350823075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)