EGAF00005317880 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005317880
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4179001
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	26653	0.6377840062732696	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	17666	0.42273261001851875	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	11011	0.26348402405263843	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	7258	0.17367787181673322	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	5833	0.13957881321397148	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5646	0.13510405955873186	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5603	0.13407510550966606	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5590	0.13376402637855317	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	4823	0.1154103576428912	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4819	0.11531464098716415	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4788	0.11457283690527952	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4433	0.10607798370950378	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	4430	0.10600619621770849	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	7810	36.397526	32
GCGGCAC	8040	35.341732	33
TCGCCGG	7900	34.185436	48
CCGTCGC	7925	34.125275	45
CCCGTCG	8005	34.04487	44
CGGCACC	8360	33.896782	34
GCACCCC	8690	32.70187	36
CCCCCGA	8925	32.08937	19
CACCCCC	9165	31.196491	37
ACCCGCG	9220	30.94977	25
GTGCCGT	665	30.819464	1
AGGACCG	1005	29.725082	70
GGCACCC	9680	29.404142	35
AGTCCGC	10320	28.366241	7
TAGTCCG	500	27.97711	6
CAGTCCG	10060	27.810247	6
GTCCGCC	10645	27.628405	8
CCCCGAC	10435	27.362764	20
TCCGCCC	10940	27.351206	9
CGTCGCC	9995	27.226675	46