FastQCFastQC Report
Wed 8 May 2024
EGAF00005317902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005317902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3493966
Total Bases261.8 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG159030.45515611771837505No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN76630.2193209664890843No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG59830.17123807157825807No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT46600.13337279183598238No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC37880.10841547971560113No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA37630.10769996044609478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)