FastQCFastQC Report
Thu 9 May 2024
EGAF00005317904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005317904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3493245
Total Bases261.8 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG168040.4810426981216605No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN75360.21573064586079704No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG64170.18369739311156244No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT48110.1377229481470667No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA40460.11582353943110203No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC38490.11018408385326536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)