FastQCFastQC Report
Thu 9 May 2024
EGAF00005317938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005317938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3235728
Total Bases243.3 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG150320.4645631524034159No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN53000.16379621525665938No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG43540.13456013608065942No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT41900.12949172489158545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)