EGAF00005317942 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005317942
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3807898
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	15723	0.41290496751751227	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	9634	0.25300047427740974	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	8927	0.23443380048520207	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7469	0.19614495976520377	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7340	0.19275726398133564	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7079	0.18590308879071865	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4960	0.13025558982934943	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4252	0.11166265482951487	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4064	0.10672554779566049	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5005	0.0	36.226383	32
GCGGCAC	5210	0.0	34.94537	33
TCGCCGG	5010	0.0	34.53277	48
CCGTCGC	5070	0.0	33.914963	45
CGGCACC	5435	0.0	33.262024	34
CCCGTCG	5205	0.0	33.078037	44
ACGATCG	55	3.324462E-4	31.25651	6
ACCCGCG	5880	0.0	30.910934	25
GCACCCC	5935	0.0	30.839388	36
CCCCCGA	5990	0.0	30.396626	19
CGTACGT	250	0.0	28.911844	19
CACCCCC	6415	0.0	28.658556	37
AGTCCGC	6540	0.0	28.178652	7
GGCGATC	1090	0.0	28.052315	70
CCCCGAC	6525	0.0	27.967033	20
CAGTCCG	6400	0.0	27.828062	6
GGCACCC	6565	0.0	27.707184	35
ATGCCCG	995	0.0	27.657608	70
GTACGGG	1180	0.0	27.097446	5
CGATCTA	285	0.0	26.962307	47