FastQCFastQC Report
Thu 9 May 2024
EGAF00005317943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005317943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3807898
Total Bases284.3 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG99400.26103640381123655No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN95150.24987539056981045No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT78410.205914129002405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)