EGAF00005317944 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005317944
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3832116
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	17251	0.45016904498715593	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	9822	0.256307481297539	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	8716	0.22744614202701588	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7933	0.20701356639517177	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7831	0.2043518515619047	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7217	0.1883293720753756	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5059	0.13201583668135305	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4500	0.11742859558531107	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4180	0.10907811767702232	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5120	35.4157	32
AGGACCG	655	34.241627	70
GCGGCAC	5325	34.069324	33
TCGCCGG	5215	33.265186	48
CCCGTCG	5355	32.877876	44
CCGTCGC	5350	32.67308	45
CGGCACC	5630	32.43249	34
GCACCCC	6010	30.537008	36
CCCCCGA	5990	30.451662	19
ACCCGCG	6265	29.1769	25
GTTATCG	180	28.649715	6
CACCCCC	6530	28.227184	37
GTACGGG	1260	27.831152	5
GGCACCC	6665	27.672066	35
GATAGGC	2860	27.475906	40
AGTCCGC	6790	27.442966	7
CCCCGAC	6730	27.266037	20
TACGGGT	1275	27.234081	6
CAGTCCG	6675	26.937168	6
GCATTAG	2995	26.286951	12