EGAF00005317946 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005317946
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3926517
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	17342	0.4416636932935729	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	10200	0.2597722103329745	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	8995	0.22908343450442215	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8163	0.207894171857654	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7683	0.19566959725374933	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7290	0.18566072679680234	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5219	0.1329167809537053	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4510	0.11486006554918773	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4294	0.10935900697743063	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5275	36.94357	32
GCGGCAC	5545	35.222515	33
CGGCACC	5590	35.013527	34
TCGCCGG	5365	34.332165	48
CCCGTCG	5475	33.35217	44
CCGTCGC	5570	32.556244	45
GCACCCC	6110	32.410107	36
TAGTCCG	445	31.681086	6
CCCCCGA	6230	31.550964	19
GTTATCG	230	31.395521	6
ACCCGCG	6365	30.843794	25
AGGACCG	630	30.072964	70
CACCCCC	6605	29.996256	37
GGCACCC	6685	29.397472	35
CCCCGAC	7000	28.138885	20
AGTCCGC	7230	27.63211	7
TACGGGT	1275	27.238766	6
CGTCGCC	6820	26.864687	46
CAGTCCG	7015	26.469292	6
CGTACGT	235	26.367516	19