EGAF00005317948 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005317948
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3889293
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	16909	0.43475767960912176	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	9905	0.2546735357814389	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	8878	0.2282677082955694	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7968	0.204870139637204	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7564	0.19448264761744616	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7324	0.18831186027897615	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5119	0.13161775160678305	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4490	0.11544514645720957	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4220	0.10850301070143083	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5495	37.156475	32
GCGGCAC	5655	36.246864	33
CGGCACC	5865	34.84317	34
TCGCCGG	5710	33.795654	48
CCGTCGC	5695	33.688572	45
CCCGTCG	5765	33.437416	44
GCACCCC	6445	31.904839	36
CCCCCGA	6540	31.457342	19
ACCCGCG	6535	31.23608	25
CACCCCC	6730	30.627172	37
GGCACCC	6900	29.886318	35
AGTCCGC	7145	28.67151	7
CCCCGAC	7170	28.609896	20
CAGTCCG	6900	28.34456	6
CGTACGT	255	26.982887	19
TCCGCCC	7740	26.955925	9
GATAGGC	2970	26.923233	40
GTCCGCC	7625	26.911692	8
TAGTCCG	410	26.827034	6
CGTCGCC	7185	26.769115	46