FastQCFastQC Report
Wed 8 May 2024
EGAF00005317950

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005317950
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4080951
Total Bases305.3 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG272600.6679815562598032No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN89370.21899307293814602No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG88760.21749832330748395No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT80390.19698839804741594No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG52270.12808289048312513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)