FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005317956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005317956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4173846
Sequences flagged as poor quality0
Sequence length35-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG294090.7046019426687041No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG92240.22099521640233014No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN87510.20966274270780477No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG78540.18817177250909592No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG54900.13153336275463923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)