FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005317957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005317957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4173846
Sequences flagged as poor quality0
Sequence length35-76
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC100170.23999447991133355No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN87360.2093033619352511No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC72590.17391633519780078No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA51400.12314781139505387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)