FastQCFastQC Report
Wed 8 May 2024
EGAF00005317958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005317958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3711292
Total Bases278.5 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG120710.32525061353296914No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC67930.183035988545229No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG49690.13388868350967803No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCAC48580.13089781132823824No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG48570.13087086653381086No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN41190.11098560824640044No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37940.1022285500575002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)