FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005317964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005317964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3684734
Sequences flagged as poor quality0
Sequence length35-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG128040.34748776980916396No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC63130.17132851380859515No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG52010.1411499446092988No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG50960.13830034949605588No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC42950.11656200963217427No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN39910.10831175330430907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)