EGAF00005317966 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005317966
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2984241
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	18464	0.6187167859432264	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7589	0.25430251779263136	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	6516	0.2183469766684393	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4695	0.1573264357670845	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3524	0.11808697755978824	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	3255	0.10907296026024708	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3219	0.10786662337257615	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	3051	0.10223705123011179	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5380	0.0	37.73154	32
CGCGCTA	95	2.2009772E-10	36.3271	28
GCGGCAC	5630	0.0	36.008038	33
TCGCCGG	5455	0.0	34.98605	48
CCCGTCG	5570	0.0	34.71407	44
CGGCACC	5855	0.0	34.64538	34
CCGTCGC	5545	0.0	34.458927	45
GCACCCC	6265	0.0	32.7456	36
CACCCCC	6390	0.0	31.905943	37
ACGATCG	55	3.328955E-4	31.249035	6
CCCCCGA	6620	0.0	30.763	19
ACCCGCG	6645	0.0	30.652693	25
AGGAGGG	8830	0.0	30.500925	70
GGCACCC	6720	0.0	30.45883	35
TAGTCCG	330	0.0	29.165766	6
CCCCCGT	6580	0.0	29.128702	42
GTTCTCG	2060	0.0	29.033323	13
CCCCGAC	7020	0.0	28.968912	20
GGCGATC	650	0.0	28.709183	70
GTGCCGT	505	0.0	28.676857	1