EGAF00005317970 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005317970
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3059133
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	19680	0.6433195287684452	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8291	0.271024502694064	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	6662	0.2177741209682613	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5126	0.16756381628389483	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3690	0.12062241164408347	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	3369	0.11012924250106157	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3329	0.10882168248323952	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	3165	0.10346068641016917	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5780	37.50452	32
GCGGCAC	5960	36.44907	33
TTATCGG	235	35.097973	7
CGGCACC	6185	35.029163	34
CCGTCGC	5950	34.691452	45
CCCGTCG	5965	34.631004	44
TCGCCGG	5985	34.404175	48
AGGACCG	825	33.18911	70
GCACCCC	6670	32.83241	36
CGCCCTA	1380	32.111694	61
AGGAGGG	9315	31.626348	70
CCCCCGA	6910	31.306805	19
CACCCCC	6990	31.102558	37
GGCACCC	7185	30.411255	35
ACCCGCG	7140	30.371534	25
CCCCCGT	6980	29.747318	42
GTTATCG	280	29.457228	6
GTCGTAC	505	29.262793	11
CCCCGAC	7460	28.965857	20
TATCGGA	265	28.530901	8