EGAF00005317972 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005317972
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3029722
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	18929	0.6247767947026163	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8205	0.2708169264374751	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	6569	0.21681857279314737	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4933	0.1628202191488196	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3683	0.12156230835700438	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	3289	0.10855781487542422	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3289	0.10855781487542422	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5575	0.0	36.038742	32
GCGGCAC	5685	0.0	35.3579	33
CGGCACC	5825	0.0	34.34936	34
TCGCCGG	5725	0.0	33.521492	48
CCGTCGC	5740	0.0	33.40934	45
CCCGTCG	5780	0.0	33.27812	44
CGCGCTA	65	2.3169294E-5	31.85787	28
GCACCCC	6525	0.0	30.965237	36
AGGAGGG	9110	0.0	30.091705	70
CCCCCGA	6750	0.0	29.863892	19
ACCCGCG	6805	0.0	29.586092	25
CACCCCC	6895	0.0	29.421776	37
AGGACCG	760	0.0	29.390738	70
GGCACCC	6920	0.0	29.030518	35
CCCCCGT	6830	0.0	28.01782	42
CCCCGAC	7210	0.0	27.968296	20
GTTATCG	235	0.0	27.787085	6
TATCGCG	75	6.329597E-5	27.494589	10
CGTACGT	240	0.0	27.232967	19
TAGTCCG	295	0.0	26.795574	6