FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005317982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005317982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3760185
Sequences flagged as poor quality0
Sequence length35-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG161810.4303245717963345No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG73400.19520316154657283No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG42710.11358483691626875No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN41530.11044669344726389No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA41520.11042009901108588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)