FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005317989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005317989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3814055
Sequences flagged as poor quality0
Sequence length35-76
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC43300.11352746617445213No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN41010.10752335768624208No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC40530.10626485459701027No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)