EGAF00005318007 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318007
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4325450
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	22132	0.51166930608376	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	17476	0.40402732663653496	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	15500	0.3583442185206163	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	11697	0.27042273058294514	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	7246	0.16752014241292812	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	7197	0.16638731230276618	No Hit
CGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	4776	0.11041625726802991	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	8050	52.726128	9
CCGAACT	1195	52.38533	67
TGGCGCG	8775	48.957794	15
GGGGACT	5265	48.768635	1
ACTCTTC	5665	48.519993	5
CGCGGTG	8810	48.37194	10
GCCGGTT	1280	47.608635	3
CGGTTCA	1305	46.9513	5
GGACTCT	6165	46.92446	3
TCTGGTC	5865	46.16454	10
TACGGCC	745	45.94452	7
GTCTACG	760	45.940075	4
TCTACGG	765	45.192364	5
GTAGTCC	9570	44.571865	27
CTACTCG	9685	44.06217	37
TGTAGTC	9720	43.85636	26
TAGTCCC	9725	43.81876	28
CGTGCCT	9815	43.769726	20
GGGACTC	6270	43.412075	2
TACTCGG	9810	43.357944	38