EGAF00005318011 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318011
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4491180
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	62

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	23981	0.5339576681406668	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	18204	0.40532777577385004	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	16661	0.37097154867985693	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	12433	0.27683147858691926	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	7756	0.17269403586585264	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	7421	0.16523497165555598	No Hit
CGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	5316	0.11836532937891601	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	4646	0.10344720095832274	No Hit
GGGGGGAAGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGT	4523	0.1007084997706616	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	7975	51.970997	9
CCGAACT	1250	49.801727	67
ACTCTTC	6290	49.489475	5
CGGTTCA	1305	48.54682	5
GGGGACT	5695	47.965763	1
GGACTCT	6555	47.959473	3
TGGCGCG	8635	47.90704	15
TCTACGG	680	47.842545	5
TCTGGTC	6410	47.078674	10
CGGGACT	1380	46.560806	1
CGCGGTG	8945	46.45012	10
GGGACTC	6410	46.37517	2
TTCTGGT	6625	45.861057	9
GCCGGTT	1385	45.743187	3
CTGGTCC	6895	43.518726	11
GTCTACG	750	43.37724	4
TGTAGTC	9720	43.358562	26
CTACTCG	9800	43.31649	37
GTAGTCC	9750	43.21363	27
TAGTCCC	9790	43.104237	28