EGAF00005318018 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318018
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3034858
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	12484	0.41135367783270255	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	4567	0.15048480027731118	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3306	0.108934256561592	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	3630	35.34211	32
GCGGCAC	3800	33.85898	33
TCGCCGG	3720	33.153538	48
CGGCACC	3920	32.915844	34
CCCGTCG	3840	32.442146	44
CCGTCGC	3810	32.151726	45
AGTCCGC	4430	29.755346	7
CCCCCGA	4435	29.187283	19
CCCCCGT	4260	29.059046	42
CAGTCCG	4425	28.69436	6
ACCCGCG	4540	28.529663	25
GCACCCC	4570	28.32036	36
TCCGCCC	4800	28.03833	9
GTCCGCC	4715	27.883396	8
CTCGTTT	1290	27.6243	16
CACCCCC	4715	27.533035	37
CCCCGAC	4705	27.440596	20
CGCCCTA	935	27.38127	61
GTTCTCG	1340	26.851732	13
TCGTTTG	1310	26.67963	17