EGAF00005318023 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318023
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3016241
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	62

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	16718	0.5542660550002471	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	13719	0.4548376605185063	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	10322	0.3422140339581618	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	6802	0.2255124839162388	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	5831	0.19332009610637876	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	4723	0.15658563092272798	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	4237	0.1404728600930761	No Hit
GGGGGGAAGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGT	3639	0.1206468581257267	No Hit
CGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	3106	0.10297585637221958	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	4550	51.744274	9
CCGAACT	670	51.48046	67
TGGCGCG	4850	48.67923	15
CGCGGTG	5015	46.878513	10
ACTCTTC	3470	46.640133	5
GGGGACT	3435	46.35214	1
TCTGGTC	3490	46.27523	10
CGGTTCA	735	45.429127	5
GGACTCT	3810	44.351562	3
TACGGCC	365	43.873337	7
CTACTCG	5545	43.313354	37
GCCGGTT	780	43.24071	3
TTCTGGT	3760	42.952274	9
GGGACTC	3835	42.81874	2
TACTCGG	5630	42.708	38
TGTAGTC	5555	42.499138	26
GTAGTCC	5560	42.445515	27
TAGTCCC	5665	41.571743	28
CCTGTAG	5685	41.464653	24
TCTACGG	390	41.060944	5