EGAF00005318027 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318027
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3011695
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	62

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	16290	0.5408914249284871	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	13591	0.45127411640288945	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	10331	0.3430294236302149	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	6959	0.2310658947868227	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	5819	0.19321345620987518	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	4667	0.15496257091106505	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	4276	0.1419798485570418	No Hit
GGGGGGAAGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGT	3560	0.11820586081923966	No Hit
CGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	3090	0.10260003087962095	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	4800	50.783985	9
CCGAACT	770	50.50384	67
TGGCGCG	5085	48.270027	15
CGGTTCA	800	47.66398	5
ACTCTTC	3335	47.470016	5
CGCGGTG	5200	47.008465	10
TCTGGTC	3430	46.055218	10
GGACTCT	3635	45.145256	3
GGGGACT	3285	44.953194	1
GCCGGTT	865	44.476624	3
TTCTGGT	3575	44.37771	9
CGGGACT	830	44.169693	1
CTACTCG	5705	43.7431	37
TACTCGG	5760	43.67873	38
GGGACTC	3675	43.635536	2
GTAGTCC	5725	43.600407	27
CCGGTTC	880	43.33089	4
TAGTCCC	5790	43.155254	28
TGTAGTC	5845	42.842556	26
CTGGTCC	3700	42.509697	11