EGAF00005318038 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318038
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3397831
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	13606	0.40043192260003513	No Hit
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13232	0.3894249007675779	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5270	0.1550989440028065	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4638	0.1364988429383333	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4077	0.11998831018964745	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3519	0.10356606905993852	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3472	0.10218283369596663	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3447	0.10144707020449222	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1380	40.43596	70
CGCGGCA	3950	36.407238	32
GCGGCAC	4210	34.437984	33
TCGCCGG	4025	33.82245	48
CCCGTCG	4210	32.42707	44
CGGCACC	4440	32.3745	34
ATGGCCG	1355	32.37039	69
CCGTCGC	4230	32.139767	45
AGGACCG	670	31.913328	70
CCCCCGA	4855	29.783598	19
ACCCGCG	4930	29.430702	25
GACGTAT	335	29.182753	44
GCACCCC	4955	29.129065	36
CCCCGAC	5080	28.480463	20
CACCCCC	5100	28.131437	37
GGCACCC	5315	27.064985	35
CGTCGCC	5100	26.757215	46
CCGCGCG	5615	25.8122	27
GTGCCGT	615	25.612307	1
CAGTCCG	5555	25.427341	6