EGAF00005318042 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318042
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3393279
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	13384	0.39442674769743363	No Hit
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13082	0.3855268016570403	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5178	0.15259576356674473	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4750	0.13998259500618723	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4152	0.1223595230454083	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3536	0.1042059907246059	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3465	0.10211361930451343	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3452	0.10173050904449649	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1550	37.91044	70
CGCGGCA	3835	36.244217	32
GCGGCAC	4100	34.01475	33
TCGCCGG	3985	33.79193	48
CCCGTCG	4115	32.92245	44
CCGTCGC	4110	32.562897	45
CGGCACC	4370	31.933247	34
GTTATCG	215	31.713373	6
ATGGCCG	1480	31.076803	69
TAGTCCG	245	30.613113	6
CCCCCGA	4675	30.032562	19
TTATCGG	240	29.83039	7
ACCCGCG	4750	29.817146	25
GCACCCC	4795	29.520597	36
CGCCCTA	800	28.643787	61
CACCCCC	5005	28.244215	37
GTCGCCT	330	27.027601	70
CCCCGAC	5170	26.974075	20
GGCACCC	5320	26.448267	35
CCGCGCG	5430	26.246563	27