EGAF00005318050 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318050
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3501915
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	15347	0.43824593115481103	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5438	0.15528646469146168	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4032	0.11513700361088149	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	4595	37.366917	32
GCGGCAC	4850	35.26579	33
CGGCACC	4970	34.491024	34
TCGCCGG	4765	33.996937	48
CCCGTCG	4905	33.340473	44
CCGTCGC	4890	33.23119	45
CCCCCGA	5405	31.837973	19
ACCCGCG	5520	31.13198	25
AGGACCG	610	31.067305	70
GCACCCC	5675	30.402306	36
CCCCGAC	5770	30.007416	20
AGTCCGC	5930	29.301579	7
CACCCCC	5955	29.270155	37
CAGTCCG	5795	28.849325	6
CCGCGCG	6040	28.403725	27
TCCGCCC	6280	28.054344	9
GGCACCC	6125	28.052094	35
CCCCCGT	5810	27.89359	42
CCCGACC	6220	27.78436	21
GTCCGCC	6295	27.767555	8