EGAF00005318057 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318057
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3358232
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	12590	0.3748996495775158	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	12545	0.3735596587728305	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	7699	0.22925753789493994	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	6467	0.19257156741999956	No Hit
GGGGACTCTTCTGGTCCGCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	5600	0.16675441124972903	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	3893	0.11592409339199912	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	3707	0.11038546473263312	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	3664	0.1091050290748227	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	4055	48.414047	9
TGGCGCG	4240	46.301643	15
GGACTCT	4640	45.4236	3
ACTCTTC	4695	45.257046	5
GGGGACT	4450	44.78002	1
TCTGGTC	4735	44.288143	10
TCTACGG	320	43.98099	5
GGGACTC	4805	43.446194	2
TTCTGGT	4875	43.438694	9
CGCGGTG	4570	43.033302	10
TGGTCCG	1550	42.07088	12
CCGAACT	665	41.9432	67
CTGGTCC	5000	41.940872	11
GTAGTCC	4875	40.77033	27
CTACTCG	4860	40.674213	37
CGGGACT	1095	40.37052	1
TACTCGG	4915	40.313526	38
TACGGCC	355	39.641285	7
GACTCTT	5640	39.378242	4
TGTAGTC	5065	39.2156	26