EGAF00005318061 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318061
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3352624
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	12526	0.3736177990732036	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	12074	0.3601358219710889	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	7639	0.2278513785023313	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	6298	0.18785285794052659	No Hit
GGGGACTCTTCTGGTCCGCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	5374	0.1602923560769117	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	3642	0.10863132877411842	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	3571	0.10651358458329953	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	3463	0.10329222722261727	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	3855	50.212826	9
CCGAACT	625	47.525425	67
TGGCGCG	4130	47.115135	15
GGGGACT	4175	45.82567	1
CGCGGTG	4375	44.244675	10
GGACTCT	4565	44.20226	3
ACTCTTC	4525	44.143917	5
TCTGGTC	4495	43.97975	10
TGGTCCG	1370	43.83807	12
GGGACTC	4920	41.514793	2
CTACTCG	4740	41.458008	37
TTCTGGT	4785	41.314312	9
TACTCGG	4780	41.20868	38
GTAGTCC	4920	40.66065	27
CGGGACT	1210	40.31567	1
TAGTCCC	4955	40.119755	28
CTGGTCC	4960	39.925842	11
GCCGGTT	760	39.735348	3
CGTGCCT	5095	39.07171	20
TGTAGTC	5120	38.918278	26