EGAF00005318064 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318064
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3146204
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	15393	0.4892562592889717	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8067	0.25640422553655134	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	6865	0.21819945559792053	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	5700	0.1811707060317767	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	5021	0.1595891429799212	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5000	0.15892167195769885	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4952	0.15739602390690496	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4233	0.13454308747938784	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3677	0.11687099755769174	No Hit
GCTCAGACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCG	3598	0.1143600351407601	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3513	0.11165836671747922	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	3411	0.10841636460954217	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3403	0.10816208993440984	No Hit
GCCGGTGCAAGGAGGGGAGGAGGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAGGCTCCAGCTT	3284	0.1043797541418166	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	4820	35.779465	32
GCGGCAC	4945	34.95566	33
CGGCACC	5070	33.968033	34
CCGTCGC	4935	33.359135	45
CGCCCTA	1190	33.196438	61
CCCGTCG	5020	32.49871	44
TCGCCGG	5155	31.928396	48
GCACCCC	5410	31.852594	36
TCGTTTG	1650	30.540342	17
GGCACCC	5690	30.458227	35
CCCCCGT	5315	30.40486	42
CGTACGT	195	30.09938	19
CCCCCGA	5810	30.068907	19
AGGACCG	730	29.708708	70
CACCCCC	5925	29.096529	37
GTTCTCG	1740	28.757277	13
ACCCGCG	6105	28.594887	25
CTCGTTT	1780	28.304464	16
GATAGGC	2190	27.907063	40
CCCCGAC	6300	27.682018	20