EGAF00005318071 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318071
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3138769
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	11089	0.3532913699606438	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	9054	0.2884570352262304	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	7807	0.2487280841629314	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	5298	0.16879228767711163	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4966	0.15821489252633755	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	4245	0.13524410365974684	No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC	3994	0.12724733804877006	No Hit
GGGGGGCCCTTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGGCCGC	3405	0.10848201954333052	No Hit
GGGGACTCTTCTGGTCCGCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	3153	0.10045339430840561	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	5385	0.0	50.840862	9
CGCGTAA	35	1.942139E-5	50.617126	61
TGGCGCG	5655	0.0	48.843872	15
CGCGGTG	5825	0.0	47.298016	10
CCGAACT	865	0.0	47.26822	67
CGGTTCA	890	0.0	47.147892	5
GCCGGTT	980	0.0	42.11874	3
TACGGCC	420	0.0	41.764416	7
GGGGACT	3500	0.0	41.62366	1
GTCTACG	435	0.0	41.115593	4
ACTCTTC	3010	0.0	40.90807	5
CTACTCG	6780	0.0	40.797348	37
GTAGTCC	6825	0.0	40.776318	27
TGTAGTC	6860	0.0	40.70932	26
TCTACGG	440	0.0	40.648373	5
TCTGGTC	2945	0.0	40.41077	10
GGACTCT	3405	0.0	40.407604	3
TAGTCCC	6865	0.0	40.310127	28
CCTGTAG	6900	0.0	40.095345	24
TACTCGG	6875	0.0	39.86102	38