EGAF00005318103 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318103
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3875916
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	15974	0.4121348347074601	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	14293	0.3687644417474476	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	8189	0.21127908860769945	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	7919	0.2043129933672453	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	6716	0.1732751690181108	No Hit
GGGGGGAAGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGT	5533	0.14275335172382475	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	5217	0.1346004402572192	No Hit
GGGGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTC	3890	0.10036337216802428	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	7825	53.545063	9
TGGCGCG	8180	51.387154	15
CGCGGTG	8250	50.99637	10
CGGCATA	215	48.526024	1
CCGAACT	1135	48.036903	67
GCCGGTT	1200	44.97655	3
TAGTCCC	9545	44.700912	28
GTAGTCC	9600	44.472866	27
TGTAGTC	9710	44.104965	26
CTACTCG	9725	43.39199	37
TACTCGG	9795	43.0953	38
CCTGTAG	9915	42.93178	24
CGTGCCT	9875	42.83248	20
CGGTTCA	1315	41.834156	5
ACTCGGG	10275	41.737514	39
GCGTGCC	10255	41.375515	19
GGCGCGT	10300	41.247036	16
AGTCCCA	10365	41.106678	29
CGAACTT	1375	41.098705	68
CGCGTGC	10360	40.88513	18