EGAF00005318109 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318109
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3872576
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	15616	0.4032457981457304	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	14189	0.36639694095093295	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	7829	0.20216517377580193	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	7824	0.2020360607512932	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	6241	0.1611588771918227	No Hit
GGGGGGAAGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGT	5365	0.13853827529788956	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	5000	0.12911302450875078	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	7650	0.0	52.465588	9
CCGAACT	1175	0.0	49.112213	67
CGCGGTG	8220	0.0	49.037926	10
TGGCGCG	8230	0.0	48.76372	15
CGCGTAA	45	1.6530321E-6	46.803997	61
CGGTTCA	1225	0.0	46.60489	5
CGGGTAG	540	0.0	43.928356	1
CGAACTT	1420	0.0	43.3424	68
GCCGGTT	1350	0.0	43.31034	3
TACGGCC	565	0.0	42.867443	7
GTAGTCC	9680	0.0	42.201595	27
TGTAGTC	9770	0.0	42.01421	26
TAGTCCC	9755	0.0	41.882557	28
CTACTCG	9625	0.0	41.599953	37
TACTCGG	9740	0.0	40.97574	38
GCCGAAC	1405	0.0	40.90259	66
CCTGTAG	9960	0.0	40.885433	24
CCGGTTC	1440	0.0	40.603447	4
ACTCGGG	10170	0.0	39.902004	39
CGTGCCT	10205	0.0	39.64531	20