FastQCFastQC Report
Thu 9 May 2024
EGAF00005318111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4783650
Total Bases358.5 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT264600.5531341130726538No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA73870.154421832700971No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT58760.12283507363624012No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT53520.11188109497977484No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN49990.10450179256425533No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)