EGAF00005318111 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318111
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4783650
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	13161	0.27512464331629616	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	10568	0.22091917259832974	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	6916	0.14457579463380474	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4999	0.10450179256425533	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	6735	49.61653	9
TGGCGCG	6990	48.004837	15
CCGAACT	1350	46.792526	67
CGCGGTG	7405	45.175716	10
CGAACTT	1540	42.49619	68
CGGTTCA	1465	42.371178	5
GCCGGTT	1545	40.406754	3
TAGTCCC	8520	39.353016	28
CTACTCG	8790	38.390247	37
TGTAGTC	8875	38.002213	26
TACTCGG	8850	37.713593	38
CGTGCCT	8960	37.406105	20
CCGGTTC	1680	37.15395	4
GCGTGCC	9175	37.042667	19
GGCGCGT	9225	37.009144	16
CCTGTAG	9265	36.419224	24
CGGCAAT	505	36.322636	1
ACTCGGG	9390	36.151928	39
GTAGTCC	9370	36.033394	27
CGCGTGC	9475	35.93512	18