FastQCFastQC Report
Wed 8 May 2024
EGAF00005318112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4803203
Total Bases360.1 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG208340.4337522274199113No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG99250.20663294888848127No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT63770.13276557330597938No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG59250.12335518611226717No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN50170.10445113396206657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)