FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005318112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4803203
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG208020.43308600531770153No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG98980.20607082398974183No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG59780.12445861646905201No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG59090.12302207506116232No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN50170.10445113396206657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)