FastQCFastQC Report
Wed 8 May 2024
EGAF00005318113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4803203
Total Bases360 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT275810.5742209937826904No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA76270.15878987417354626No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT61100.12720678264066707No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT55610.1157769096996317No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN49730.10353507857152822No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC48370.10070363463713693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)