FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005318116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4884232
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG203610.4168720896140888No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG96680.1979430952501847No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG58710.12020313531380164No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG57850.11844236719304078No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN52220.10691547821643198No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)