EGAF00005318128 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318128
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3425805
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	19758	0.5767403573758576	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7167	0.20920630333600426	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	6271	0.1830518666415631	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6156	0.1796949913961828	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5239	0.15292756009171565	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4693	0.1369897002310406	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4569	0.1333701130099349	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3972	0.11594355195348245	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5920	35.571964	32
GCGGCAC	6155	34.168575	33
CGTACGT	300	33.36532	19
CGGCACC	6350	33.242085	34
TCGCCGG	6135	32.694454	48
CCGTCGC	6220	32.0843	45
CCCGTCG	6430	31.235596	44
ACCCGCG	7000	30.465569	25
CCCCCGA	7035	30.222834	19
AGTCCGC	7190	29.941334	7
GCACCCC	7210	29.73762	36
CAGTCCG	6910	29.60684	6
CCCCGAC	7245	29.495337	20
GGCACCC	7335	29.311657	35
CACCCCC	7370	29.151524	37
CGATCTA	360	29.056326	47
TCCGCCC	7525	28.791782	9
CCCCCGT	6930	28.749664	42
GTACGTA	350	28.604282	20
GTCCGCC	7570	28.392757	8