EGAF00005318132 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318132
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3433442
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	19761	0.5755448905209408	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7215	0.21013898006723283	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	6348	0.18488735210904975	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6342	0.1847126003584741	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5303	0.15445142221712205	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4828	0.1406169086298822	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4663	0.1358112354890515	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4166	0.12133596548303423	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3513	0.10231714996204976	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	3507	0.1021423982114741	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGACCG	765	35.82668	70
CGCGGCA	5675	34.047607	32
GCGGCAC	5860	33.098663	33
CGGCACC	5980	32.38699	34
TCGCCGG	5745	31.763624	48
CCGTCGC	5915	30.850988	45
CCCGTCG	6095	30.037354	44
CGTACGT	295	29.251347	19
CGATCTA	315	28.785656	47
CCCCCGA	6800	28.78074	19
ACCCGCG	6765	28.759136	25
GCACCCC	6775	28.714958	36
AGTCCGC	7010	28.442747	7
CAGTCCG	6720	28.438206	6
CCCCGAC	6935	28.327467	20
GTACGGG	1140	28.139786	5
GAACGAC	430	28.077684	9
TACGGGT	1185	27.945675	6
GGCACCC	6970	27.794565	35
TCCGCCC	7320	27.568077	9